Matlab Index
Matlab Directories
src\geckomat\change_model
src\geckomat\gather_kcats
src\geckomat\get_enzyme_data
src\geckomat\kcat_sensitivity_analysis
src\geckomat\kcat_sensitivity_analysis\Bayesian
src\geckomat\limit_proteins
src\geckomat\model_adapter
src\geckomat\utilities
Matlab Files found in these Directories
ModelAdapter
ecFSEOF
getStandardKcat
runDLKcat
ModelAdapterManager
ecFVA
getSubsetEcModel
saveEcModel
abc_max
enzymeUsage
getcarbonnum
selectKcatValue
adapterTemplate
fillEnzConcs
getrSample
sensitivityTuning
addCarbonNum
findECInDB
loadBRENDAdata
setKcatForReactions
addNewRxnsToEC
findGECKOroot
loadConventionalGEM
setProtPoolSize
anaerobicModel_GECKO
findMaxValue
loadDatabases
sigmaFitter
applyComplexData
findMetSmiles
loadEcModel
startGECKOproject
applyCustomKcats
flexibilizeEnzConcs
loadFluxData
truncateValues
applyKcatConstraints
fuzzyKcatMatching
loadProtData
updateGECKOdoc
bayesianSensitivityTuning
getComplexData
makeEcModel
updateProtPool
calculateFfactor
getConcControlCoeffs
mapRxnsToConv
updateprior
calculateMW
getECfromDatabase
mergeDLKcatAndFuzzyKcats
writeDLKcatInput
changeMedia
getECfromGEM
plotEcFVA
constrainEnzConcs
getECstring
readDLKcatOutput
constrainFluxData
getKcatAcrossIsozymes
removeStandardKcat
copyECtoGEM
getReactionsFromEnzyme
reportEnzymeUsage
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