Matlab Index
Matlab Directories
src\geckomat\change_model
src\geckomat\gather_kcats
src\geckomat\get_enzyme_data
src\geckomat\kcat_sensitivity_analysis
src\geckomat\kcat_sensitivity_analysis\Bayesian
src\geckomat\limit_proteins
src\geckomat\model_adapter
src\geckomat\utilities
Matlab Files found in these Directories
ModelAdapter
copyECtoGEM
getKcatAcrossIsozymes
readDLKcatOutput
ModelAdapterManager
ecFSEOF
getReactionsFromEnzyme
reportEnzymeUsage
abc_max
ecFVA
getStandardKcat
runDLKcat
adapterTemplate
enzymeUsage
getSubsetEcModel
saveEcModel
addCarbonNum
fillEnzConcs
getcarbonnum
selectKcatValue
addNewRxnsToEC
findECInDB
getrSample
sensitivityTuning
anaerobicModel
findGECKOroot
loadBRENDAdata
setKcatForReactions
applyComplexData
findMaxValue
loadConventionalGEM
setProtPoolSize
applyCustomKcats
findMetSmiles
loadDatabases
sigmaFitter
applyKcatConstraints
flexibilizeEnzConcs
loadEcModel
startGECKOproject
bayesianSensitivityTuning
fuzzyKcatMatching
loadFluxData
truncateValues
calculateFfactor
getComplexData
loadProtData
updateGECKOdoc
calculateMW
getConcControlCoeffs
makeEcModel
updateProtPool
changeMedia
getECfromDatabase
mapRxnsToConv
updateprior
constrainEnzConcs
getECfromGEM
mergeDLKcatAndFuzzyKcats
writeDLKcatInput
constrainFluxData
getECstring
plotEcFVA
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