getExprForRxnScore

 getExprForRxnScore
   Converts a reaction score to the gene expression (CPM or TPM) required 
   to get that reaction score, if the GPR is only a single gene.
   Useful function primarily in test cases, where you want to be able to
   define the reaction scores of rxns, but need to send in gene expression.

   scores        Vector of scores to convert
   threshold     Gene threshold (opt, default 1)

   expr          The resulting gene expression vector.

   Usage: expr = getExprForRxnScore(scores, threshold)

0001 function expr = getExprForRxnScore(scores, threshold)
0002 % getExprForRxnScore
0003 %   Converts a reaction score to the gene expression (CPM or TPM) required
0004 %   to get that reaction score, if the GPR is only a single gene.
0005 %   Useful function primarily in test cases, where you want to be able to
0006 %   define the reaction scores of rxns, but need to send in gene expression.
0007 %
0008 %   scores        Vector of scores to convert
0009 %   threshold     Gene threshold (opt, default 1)
0010 %
0011 %   expr          The resulting gene expression vector.
0012 %
0013 %   Usage: expr = getExprForRxnScore(scores, threshold)
0014 
0015 if nargin < 2
0016     threshold = 1;
0017 end
0018 
0019 %This is how the score is calculated: 5*log(expression./threshold)
0020 %expression = threshold*10.^(scores/5)
0021 %This is a bit confusing - it seems that it is threshold*e.^(scores/5)
0022 %This is probably what is being used in scoreComplexModel, this code
0023 %negates that perfectly, see the T0009 test case.
0024 
0025 expr = threshold*exp(scores/5);
0026 
0027 end