Ecoli-GEM: Genome-scale metabolic model for Escherichia coli

Description

This repository contains the latest version the Ecoli-GEM, a genome scale metabolic model of Escherichia coli str. K-12 substr. MG1655.

Citation

The latest version of the E. coli GEM, iML1515, was taken from BiGG Models with the following publication:

Monk, J.M., Lloyd, C.J., Brunk, E. et al (2017). iML1515, a knowledgebase that computes Escherichia coli traits. Nat Biotechnol 35, 904–908 doi:10.1038/nbt.3956

Keywords

Utilisation: experimental data reconstruction; multi-omics integrative analysis;, in silico strain design; model template Field: metabolic-network reconstruction Type of model: reconstruction; curated
Model source: EscherichiaColi
Omic source:
Taxonomic name: Escherichia coli str. K-12 substr. MG1655
Taxonomy ID: taxonomy:511145
Genome ID: insdc.gca:GCA_000005845.2
Metabolic system:
Cell type: Prokaryotic Strain: MG1655
Condition:

Installation

Usage

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Contributors

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