Master index
| Master index |
Index for core |
 FSEOF | FSEOF: implements the algorithm of Flux Scanning based on Enforced Objective Flux. |
| addExchangeRxns | addExchangeRxns |
| addGenesRaven | addGenesRaven |
| addMets | addMets |
| addRxns | addRxns |
| addRxnsGenesMets | addRxnsGenesMets |
| addTransport | addTransport |
| analyzeSampling | analyzeSampling |
| buildEquation | buildEquation |
| canConsume | canConsume |
| canProduce | canProduce |
| changeGrRules | changeGrRules |
| changeRxns | changeRxns |
| checkModelStruct | checkModelStruct |
| checkProduction | checkProduction |
| checkRxn | checkRxn |
| checkTasks | checkTasks |
| compareMultipleModels | compareMultipleModels |
| compareRxnsGenesMetsComps | compareRxnsGenesMetsComps |
| constructEquations | constructEquations |
| constructS | constructS |
| consumeSomething | consumeSomething |
| contractModel | contractModel |
| convertCharArray | convertCharArray |
| convertToIrrev | convertToIrrev |
| copyToComps | copyToComps |
| deleteUnusedGenes | deleteUnusedGenes |
| dispEM | dispEM |
| expandModel | expandModel |
| fillGaps | fillGaps |
| findGeneDeletions | findGeneDeletions |
| findRAVENroot | findRAVENroot |
| fitParameters | fitParameters |
| fitTasks | fitTasks |
| followChanged | followChanged |
| followFluxes | followFluxes |
| gapReport | gapReport |
| generateNewIds | generateNewIds |
| getAllRxnsFromGenes | getAllRxnsFromGenes |
| getAllSubGraphs | getAllSubGraphs |
| getAllowedBounds | getAllowedBounds |
| getElementalBalance | getElementalBalance |
| getEssentialRxns | getEssentialRxns |
| getExchangeRxns | getExchangeRxns |
| getExpressionStructure | getExpressionStructure |
| getFluxZ | getFluxZ |
| getGenesFromGrRules | getGenesFromGrRules Extract gene list and rxnGeneMat from grRules array. |
| getIndexes | getIndexes |
| getMetsInComp | getMetsInComp |
| getMinNrFluxes | getMinNrFluxes |
| getModelFromHomology | getModelFromHomology |
| getRxnsInComp | getRxnsInComp |
| getTransportRxns | getTransportRxns |
| guessComposition | guessComposition |
| haveFlux | haveFlux |
| makeSomething | makeSomething |
| mapCompartments | mapCompartments |
| mergeCompartments | mergeCompartments |
| mergeModels | mergeModels |
| parallelPoolRAVEN | handleParallelRAVEN |
| parseFormulas | parseFormulas |
| parseRxnEqu | parseRxnEqu |
| parseTaskList | parseTaskList |
| permuteModel | permuteModel |
| predictLocalization | predictLocalization |
| printFluxes | printFluxes |
| printModel | printModel |
| printModelStats | printModelStats |
| printOrange | printOrange |
| randomSampling | randomSampling |
| removeBadRxns | removeBadRxns |
| removeGenes | removeGenes |
| removeMets | removeMets |
| removeReactions | removeReactions |
| replaceMets | replaceMets |
| reporterMetabolites | reporterMetabolites |
| runDynamicFBA | runDynamicFBA |
| runPhenotypePhasePlane | runPhenotypePhasePlane |
| runProductionEnvelope | runProductionEnvelope |
| runRobustnessAnalysis | runRobustnessAnalysis |
| runSimpleOptKnock | runSimpleOptKnock |
| setExchangeBounds | setExchangeBounds |
| setParam | setParam |
| simplifyModel | simplifyModel |
| sortModel | sortModel |
| standardizeGrRules | standardizeGrRules |